rs243420189 SNP Detail

Summary

• ID
  rs243420189
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44508941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCTTA ATTTTGGTCT
  TTTCGTTGGA TTTTCCCTTT CTTTTTTTTT CCCCTCGCCC CCCTCCTTGT TATCGCTCAG
  TTTTGAGCGA AGGTTTACAT TTTTAAAAAT TTTGCTTTTC AGCCCGCCTT GATGTAGCGC
  GAGTCTCATC GACTCAAAAA AAAAAAAAAA AATCTGTGGT TGGCGTTTTT TTTTTTTTTT
  C
  CTTTTTTTTT TTTTCAAATA TTTTCAAAGG GGAGGAGATT TTTCCACAAG AAAAGGTTGT
  TTTCATGTTT GGGATCCAGG AAAGCATCCA ACGGAGTGGA AGCAGTATGA AGGAAGAGCC
  GCTGGGCAGC GGCATGAACG CGGTGCGGAC GTGGATGCAG GGCGCCGGGG TGCTGGACGC
  CAACACAGCG GCGCAGAGGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201274	MGP_WTSI_11_44431616	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243420189					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201274	MGP_WTSI_11_44431616	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44508941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	811 bp distal
Cpgi2763	CpG island 2763	31 bp proximal
Cpgi2764	CpG island 2764	1658 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	1367 bp proximal
Ebf1	early B cell factor 1	within coordinates
Gm37695	predicted gene, 37695	1098 bp upstream
Rr369170	regulatory region 369170	801 bp downstream
Rr445653	regulatory region 445653	787 bp distal
Rr445654	regulatory region 445654	within coordinates
Tssr101029	transcription start site region 101029	812 bp downstream
Tssr101030	transcription start site region 101030	778 bp downstream
Tssr101031	transcription start site region 101031	753 bp downstream
Tssr101032	transcription start site region 101032	717 bp downstream
Tssr101033	transcription start site region 101033	601 bp downstream
Tssr101034	transcription start site region 101034	571 bp downstream
Tssr101035	transcription start site region 101035	556 bp downstream
Tssr101036	transcription start site region 101036	484 bp downstream
Tssr101037	transcription start site region 101037	454 bp downstream
Tssr101038	transcription start site region 101038	411 bp downstream
Tssr101039	transcription start site region 101039	227 bp downstream
Tssr101040	transcription start site region 101040	179 bp downstream
Tssr101041	transcription start site region 101041	10 bp upstream
Tssr101042	transcription start site region 101042	71 bp upstream
Tssr101043	transcription start site region 101043	94 bp upstream
Tssr101044	transcription start site region 101044	464 bp upstream
Tssr107570	transcription start site region 107570	45 bp upstream