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rs243420527 SNP Detail
Summary
  • ID
    rs243420527
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:136014056 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGAAATTCCC TGGGATAAGC
    TCATTTTGCT ATTCTGCTTA GTATACGGGC TTCGAGTTGG CTAATATAAC CATATACAAG
    CATATATAGA ACACCCACTG TAAGACTAAA TACTGAGGAG AATAAAACCA AACAAGATGG
    GTGGTACCCT TCTTGCCAAC AATCTGTAGG GAGAACGGTG TGTCCGGTTA ACCTGGATGC
    R
    ATATGGTAAG TATTCTGTTG GCCTGAGCAA GGACGTATTG TGGTGTGGGA AATAGTAAGT
    CGAGGAGTGG TTAATTCTAG ATGTGGTGTC CAAGGATGGA GCGAAGAGTG ATAAAGGGTG
    GGGAGAAACA GAACAGCAGT TGGCTCTAGA ACTGGGCCAT AAAGACGAGA ATTTCACTGG
    TCTAAGAAAA GGAGAGCCTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363387943 MGP_WTSI_4_135842660 EVA_MGPV3 EVA_MGPV3 f SNP A A A G G A G G G G G G G G A A G G G A G G A A G G G A A G G A G A G G G A G G G G G G G A G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243420527 SNP A A A G G A G G G G G G G G A A G G G A G G A A G G G A A G G A G A G G G A G G G G G G G A G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363387943 MGP_WTSI_4_135842660 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:136014056 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15107 CpG island 15107 212 bp distal
Rr398613 regulatory region 398613 1199 bp downstream
Rr602341 regulatory region 602341 668 bp distal
Rr602342 regulatory region 602342 within coordinates
Rr602343 regulatory region 602343 1115 bp proximal
Rr602344 regulatory region 602344 1819 bp proximal
Tssr39697 transcription start site region 39697 631 bp downstream
Tssr39698 transcription start site region 39698 595 bp downstream
Tssr39699 transcription start site region 39699 555 bp downstream
Zfp46 zinc finger protein 46 Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory