rs243424657 SNP Detail

Summary

• ID
  rs243424657
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24600622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTAAAGAA GTGCCACCAA CGTGATCCCC TGAGTTTGTA
  ATCCCTGGGA CCCACGTGTG GAAGGAGAGA ACCAGTTCTT GTAAACTGTC CTTTGATCTC
  M
  ACTCACTGTG GAGTGCTCAG GCATGGGTGT GTTTCTCGCA CCCCCCCCCA CACACACACA
  CAAATAAATA AATAAAATTA CTATATTTTA AAAATAAAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495662	CHEV_5_23901442	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243424657					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24600622 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	868 bp distal
Rr112284	regulatory region 112284	579 bp proximal
Rr112285	regulatory region 112285	1779 bp proximal
Rr124925	regulatory region 124925	221 bp distal
Rr398998	regulatory region 398998	1915 bp downstream
Rr398999	regulatory region 398999	1154 bp downstream
Tssr45411	transcription start site region 45411	1960 bp downstream
Tssr45412	transcription start site region 45412	1194 bp downstream