rs243425302 SNP Detail

Summary

• ID
  rs243425302
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:147166555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA GTTAAAGCTT TCAGCTGTCT
  W
  GGGCGGGGTT CCCTCTCATC AGAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322086696	CHEV_6_147213579	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243425302					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:147166555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18178	CpG island 18178	505 bp distal
D6Mit26	DNA segment, Chr 6, Massachusetts Institute of Technology 26	186 bp distal
Pthlh	parathyroid hormone-like peptide	1044 bp upstream
Rr145960	regulatory region 145960	554 bp distal
Tssr59618	transcription start site region 59618	954 bp downstream
Tssr64140	transcription start site region 64140	1183 bp upstream
Tssr64141	transcription start site region 64141	1117 bp upstream
Tssr64142	transcription start site region 64142	1080 bp upstream
Tssr64143	transcription start site region 64143	1029 bp upstream
Tssr64144	transcription start site region 64144	905 bp upstream