rs243430291 SNP Detail

Summary

• ID
  rs243430291
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115654350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTTCCCC TCTTTGAAAT AGGTTCTCAA
  TTTTATTTAT TTAttgtggt ttttcgagac agggtttctt tgtctaacag ccctgtctgt
  cctggaactc actttgtaaa ccaggctggc ctcgagctca aagagatcgc tctgcctctg
  M
  ctcttgagtg ctgggattaa aagcatgtgc cagattccct cttaatttga ggctggcctc
  agactctggt tctcctacct ctgtgtaagt attttccaag tagccatttG GGGACCCGCA
  AGGTGACTCA GAGAGTAAAA AGTGTGCAGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916363	CHEV_6_115627407	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243430291					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115654350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17873	CpG island 17873	322 bp distal
D830050J10Rik	RIKEN cDNA D830050J10 gene	within coordinates
Raf1	v-raf-leukemia viral oncogene 1	754 bp upstream
Rr399847	regulatory region 399847	723 bp downstream
Rr637016	regulatory region 637016	1436 bp distal
Rr637017	regulatory region 637017	1384 bp distal
Rr637018	regulatory region 637018	765 bp distal
Rr637019	regulatory region 637019	264 bp distal
Tssr58320	transcription start site region 58320	1433 bp downstream
Tssr58321	transcription start site region 58321	1385 bp downstream
Tssr58322	transcription start site region 58322	635 bp downstream
Tssr62522	transcription start site region 62522	1502 bp upstream
Tssr62523	transcription start site region 62523	811 bp upstream
Tssr62524	transcription start site region 62524	771 bp upstream
Tssr62525	transcription start site region 62525	747 bp upstream