rs243438581 SNP Detail

Summary

• ID
  rs243438581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5898327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG GAAGGGGCCC ATCTCTCACC
  Y
  TTCCCCCACT GTTGCAAAAA TCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717631	CHEV_19_5848299	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243438581					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5898327 () rs orientation: forward

Symbol	Name	Function Class
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	within coordinates
Gm59610	predicted gene, 59610	250 bp downstream
Rr370436	regulatory region 370436	within coordinates
Tssr154515	transcription start site region 154515	1515 bp downstream
Tssr154516	transcription start site region 154516	1439 bp downstream
Tssr154517	transcription start site region 154517	1413 bp downstream
Tssr154518	transcription start site region 154518	1389 bp downstream
Tssr154519	transcription start site region 154519	1310 bp downstream
Tssr154520	transcription start site region 154520	196 bp upstream
Tssr154521	transcription start site region 154521	290 bp upstream
Tssr157781	transcription start site region 157781	1668 bp upstream
Tssr157782	transcription start site region 157782	1516 bp upstream
Tssr157783	transcription start site region 157783	175 bp upstream
Tssr157784	transcription start site region 157784	1644 bp downstream
Tssr157785	transcription start site region 157785	1705 bp downstream