rs243440767 SNP Detail

Summary

• ID
  rs243440767
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28426483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGCCTGC CTGCATGCTC
  TCTCTTGTCG TTGGAGCCTG GAGCCTTGCT CTCTGGGCAC AGAGGGCTCT GCTCTCCTGC
  CTGCTGGGAC CTGTGGATGG GCTTCCTGGC CAAGGCCCCC TCTTCCAGGG GAGGAGCAGG
  GATCTGGATT TAATTTGGTT TTGGTTTTGG TTTTTTGATT TTTTTTTCTT TTTTTTCTTT
  C
  TTTTTTTTTG TTTTGGGGGT ACCCTTGGGG CCAGGTTTTG GGGGGAGGAA AGTGAGGGCT
  CCGGGTGGTG CTATGACGTG GAACTGGATA TTGAGTAATA AATTTGCTGT GGTTTGTACC
  CGGTGTTGTC TGTTGCCTGG AAGTTGGGAA GCTGAGTTAC TGTGGGCACA GAAAGACGGT
  GTGGGAGAGG CAGAAAGCAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367792799	MGP_WTSI_6_28376484	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243440767					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367792799	MGP_WTSI_6_28376484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28426483 () rs orientation: forward

Symbol	Name	Function Class
Arf5	ARF GTPase 5	within coordinates
Fscn3	fascin actin-bundling protein 3	1405 bp upstream
Rr627384	regulatory region 627384	715 bp proximal
Tssr55192	transcription start site region 55192	1895 bp downstream
Tssr55193	transcription start site region 55193	219 bp downstream
Tssr55194	transcription start site region 55194	164 bp downstream
Tssr55195	transcription start site region 55195	130 bp downstream
Tssr55196	transcription start site region 55196	94 bp downstream
Tssr55197	transcription start site region 55197	8 bp upstream
Tssr55198	transcription start site region 55198	1398 bp upstream
Tssr55199	transcription start site region 55199	1434 bp upstream