rs243441283 SNP Detail

Summary

• ID
  rs243441283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96141402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCATCTT TTAGTTTTAT
  TGAGTATTTT AAGTTGAGCT TGTCTGAGCT CGATTGCTTA CGTCTGACAC AGTCTCAAGT
  TTCCAGTGAA TGGTAACAAA GACTGTAGAG TGTTGTTGGT ACTGCAGTGA GAGGCATGCT
  TCCTTAGACC AGGTAAGAGA GGCCAGTTTG TTTCTCATAG CCTCGTGAGT TTTTACTGTG
  Y
  TTTTATTTGT TAAGCTGCTG CCAGGCTAAA TAGAAAAGTA GCCAGGAACA TGCTGATTTC
  AAGACGTCCT TGCTGGTTAC AGATAGAAAA ACTACAGAGC ATGGGGGGGA AGGTGGGGGG
  AGGGGTAGTT ATCCTAGTTT ATCCTCAGCT ATTTATATAA ATTAATTACA ATGCAGAGAT
  AATTCTGGGA TTCAGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378570983	MGP_WTSI_9_96159768	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243441283					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378570983	MGP_WTSI_9_96159768	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96141402 () rs orientation: forward

Symbol	Name	Function Class
Rr684927	regulatory region 684927	597 bp distal
Rr684928	regulatory region 684928	433 bp distal
Rr684929	regulatory region 684929	54 bp distal
Rr684930	regulatory region 684930	within coordinates
Rr684931	regulatory region 684931	436 bp proximal
Rr684932	regulatory region 684932	1775 bp proximal
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	115 bp downstream
Tssr86589	transcription start site region 86589	638 bp downstream
Tssr86590	transcription start site region 86590	623 bp downstream
Tssr86591	transcription start site region 86591	564 bp downstream
Tssr86592	transcription start site region 86592	547 bp downstream
Tssr86593	transcription start site region 86593	519 bp downstream
Tssr86594	transcription start site region 86594	336 bp downstream
Tssr86595	transcription start site region 86595	88 bp downstream
Tssr86596	transcription start site region 86596	72 bp downstream