rs243442575 SNP Detail

Summary

• ID
  rs243442575
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36005510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATATATG CATCAGAGAT
  TATATAACTA TATATTCAAA GCTGATAGTA TTCATAATAA ATTTATGATG AAGTTATAAA
  AGCGAATATT TATGTTATGA AAATGCATTT TTCAAGTAAA AATACTACTT TTCAATTCTT
  AAATTGTATT TTATTTTCAT GTATGTGTAT ACATGAGTGT GTATCTCTGT GTGTGCCGTA
  M
  ATGTGTGCTG TGTCTGTGCC AGCCAGCAGA AGGCATCAAA TAACCTGTCA CTGGAGTTAC
  AGTTCATGAG CTACCTGAAG GAGTGCTGCA AACTAACCCT GGATCCTTGG CAATATCTGT
  TCTTAACTGC TGAGCCATCC TTTAGGCTTC TAAATAGATA TTACTATAGT GGGATGGACA
  TTAAAAACCT CAAGTAACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084815	CHEV_4_35952543	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243442575					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36005510 () rs orientation: forward

Symbol	Name	Function Class
Gm12369	predicted gene 12369	1364 bp upstream
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	494 bp downstream