rs243449887 SNP Detail

Summary

• ID
  rs243449887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCCCACC CACTCACTTG
  CTATGAGTGA TCTTACCATA GCCCAGAGTC TACAGCCTGG CATCCCGACC TGGCTGTAGT
  GTGCGGTAGA GTTGGTTCCA GGCAGGTGAT GGAGACTAAG CACACTGGAT CCTGAAGGAT
  CCAACAGGCT GGCAGGCAGG GAAGGGGACA CCTTGCTGCA GCCTGTGGCT ACCGTTCTCC
  Y
  GCCCCTGCAG AGCCTGCAGC ATGCTGAGCA AGATGAGGAT GGTAGCTGGC GGGGACAGGA
  CAGTGTCACT CTGGCTCCTG GGCACACCAC GTGTCATGAG TTTTAACTGA GATCCAGCCT
  AGCCTCAGAA GACACACTTT TTTCCAGGGT GAAGGGAAAT CGTTCCTGAC ACCCAAGGCC
  CTTGGTGCCT GCAACATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322844725	CHEV_8_124315335	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243449887					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518174 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	352 bp downstream
Rr671926	regulatory region 671926	724 bp proximal
Tssr79823	transcription start site region 79823	896 bp upstream
Tssr79824	transcription start site region 79824	1014 bp upstream
Tssr79825	transcription start site region 79825	1043 bp upstream
Tssr83237	transcription start site region 83237	749 bp downstream
Tssr83238	transcription start site region 83238	765 bp downstream
Tssr83239	transcription start site region 83239	779 bp downstream
Tssr83240	transcription start site region 83240	827 bp downstream
Tssr83241	transcription start site region 83241	900 bp downstream