rs243472553 SNP Detail

Summary

• ID
  rs243472553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95721312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGGTAG ATTCTTGCTC
  CTACTCCTTT TTGGCTTCTT TTTCCTCCCA TCTCTCCCTT CCCACCATCT CCTTTCCTTC
  TCCACAGCCT CCTTTCTTCC CTCTCTTTCT TGTTATCCTG AATCCTCCCT CCCCCCTCCT
  CTGACACTGA CATGTAGTTA ATGGTGGGTT GTCAGGACCC TGGGGGCCAT CATAGCTGGC
  Y
  CTCTAAGGGG ACGCAAACAG CCTGGAGAGC CATCAGGAAG TGGTTAGGGG TGGCCACACT
  CCCTACCTCT CCAGCTGAAC ATTTTTGAGT CTCAGCTGTC ACAGCATAGG TCTCAGAGAA
  GGGTAGTGGG AGATAACTAG ACAAGGAGAA TTGGAAATAC CACAGCCTTG GGAAGAGCCA
  GAGAGGAGCT GAGATCCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322809826	CHEV_8_97518584	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243472553					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95721312 () rs orientation: forward

Symbol	Name	Function Class
Adgrg1	adhesion G protein-coupled receptor G1	within coordinates
Tssr78941	transcription start site region 78941	1982 bp downstream
Tssr78942	transcription start site region 78942	1810 bp downstream
Tssr78943	transcription start site region 78943	1747 bp downstream
Tssr78944	transcription start site region 78944	357 bp downstream
Tssr78945	transcription start site region 78945	294 bp downstream
Tssr78946	transcription start site region 78946	251 bp downstream
Tssr78947	transcription start site region 78947	9 bp upstream
Tssr78948	transcription start site region 78948	61 bp upstream
Tssr78949	transcription start site region 78949	109 bp upstream
Tssr78950	transcription start site region 78950	156 bp upstream
Tssr78951	transcription start site region 78951	907 bp upstream
Tssr78952	transcription start site region 78952	999 bp upstream
Tssr78953	transcription start site region 78953	1020 bp upstream
Tssr78954	transcription start site region 78954	1066 bp upstream