rs243485398 SNP Detail

Summary

• ID
  rs243485398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156938776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTAAGTC AAGTCGGGTG TATGCACGGT GTGCACACAC
  ATGCACAGGC ACGCACGCGC ACACACACAC ACACACACAC ACACACACAC ACACACACTC
  R
  CACTCGCACT TCTCTTTTGT GTTTGAGAGA TTACTTTTAC TTTAAGAGCC TGGGTTCCAC
  TTCTAAAACT AATAAAGAGA AGCATCATTC ACTCTCTGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584146	CHEV_2_156922592	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243485398					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156938776 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1179 bp distal
Rr568432	regulatory region 568432	1622 bp distal
Samhd1	SAM domain and HD domain, 1	678 bp downstream
Tldc2	TBC/LysM associated domain containing 2	374 bp downstream
Tssr27104	transcription start site region 27104	1602 bp downstream
Tssr27105	transcription start site region 27105	1647 bp downstream
Tssr27106	transcription start site region 27106	1736 bp downstream
Tssr27107	transcription start site region 27107	1880 bp downstream