rs243491901 SNP Detail

Summary

• ID
  rs243491901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:108534289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCTGTTT CTCTTTTTGC
  ACCTTCCTAC TGTGGCTTGC CTTCCCGAGT GATCTGAATT CAGCCGAATT GCCGTTAAGC
  CACAGAAATG TGCAAGGAGT AGGTATAAGC TATTGCGTAG TTTGTGATAC TTGATCTACA
  TGTTATTTTA TACTCCCAAC AACGTGGTAC TGAGAGGGCA TGCTGCCAAA AATGAAAGCT
  Y
  AAATGACAGC AAGTTCAAAG CCCTTGACCC GTTAAACAGA GTACCCACAT GCCCTCTCTT
  ATGCAGTGAC CTACCACCAC CCCAGCACAA ACAGAAAGTG CCCACCACCC ATGTTAGGGA
  AGAGGATGTG TCAGAAGCTT CCTCCAACTC AAATAAACCA GGTATATTTG TAACATATTC
  TGGATATATA ATATCTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388644	CHEV_7_116078596	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243491901					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108534289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	173 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	Intron
Rr400539	regulatory region 400539	624 bp downstream
Rr652952	regulatory region 652952	655 bp distal
Rr652953	regulatory region 652953	912 bp distal
Tssr68456	transcription start site region 68456	652 bp downstream
Tssr68457	transcription start site region 68457	554 bp downstream