rs243505054 SNP Detail

Summary

• ID
  rs243505054
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74537444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTTGGA AACGGACTTT
  ACCTGTGTTT CAAGCTACCT TAATGTCACT GCTCTTGAGG TTTCTGCGCT TTGAAAGGGA
  TTTCTGTGTT TTTAAAGAGA ATAGTTTGTA GTATCGCATA GAAGCAGTCC TTGAGCTGTC
  CTATAGAAGG GTAATTTGAT ACGGACCTTG TGGCTATATT TTTATAATGG TAATTTTTAA
  M
  GTCTGAGCTG GTGGTTTGCC TCAACAACAT AAACTTCCTA ATGATCAGCG CTAGATGATT
  GAATATAAAA TGCTTTATTA ATCAAACAAG TGCACTTGAA CATTTTAAAT CTTTATGGTG
  AGTAAATTAA AAGAAGTTTA TTAATAATGT TTTTAAAAAT TATGCCTGCA GAATATTTAC
  TTTATTATTT GATTAAATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485033	MGP_WTSI_2_74545157	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243505054					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485033	MGP_WTSI_2_74545157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74537444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	862 bp distal
Gm38462	predicted gene, 38462	within coordinates
Hoxd8	homeobox D8	mRNA-UTR
Igs15	intergenic site 15	within coordinates
Rr559367	regulatory region 559367	1938 bp distal
Rr559368	regulatory region 559368	239 bp distal
Rr559369	regulatory region 559369	548 bp proximal
Rr559370	regulatory region 559370	1501 bp proximal
Tssr18426	transcription start site region 18426	1999 bp downstream
Tssr18427	transcription start site region 18427	1944 bp downstream
Tssr18428	transcription start site region 18428	1911 bp downstream
Tssr18429	transcription start site region 18429	1722 bp downstream
Tssr18430	transcription start site region 18430	1331 bp downstream
Tssr24623	transcription start site region 24623	1267 bp upstream