rs243509789 SNP Detail

Summary

• ID
  rs243509789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173420215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC TCCCCCCCCC CCCCCCCAGC
  Y
  TCCTCCGCGG TCCTCGCCAG CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss639908192	FVB_NJ_2_173403923	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	T	T	C	T	C	C	C	C	T	C	C	T	T	C	C	C	C	C	C	C	T	T	T	C	T	C	C	T	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs243509789					SNP	C	C	C	C	C	T	T	T	C	T	C	C	C	C	T	C	C	T	T	C	C	C	C	C	C	C	T	T	T	C	T	C	C	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639908192	FVB_NJ_2_173403923	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173420215 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	149 bp upstream
Cpgi12846	CpG island 12846	within coordinates
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	within coordinates
Rr571985	regulatory region 571985	473 bp distal
Rr571986	regulatory region 571986	within coordinates
Tssr27995	transcription start site region 27995	242 bp upstream
Tssr27996	transcription start site region 27996	223 bp upstream
Tssr27997	transcription start site region 27997	211 bp upstream
Tssr27998	transcription start site region 27998	144 bp upstream
Tssr27999	transcription start site region 27999	88 bp upstream