rs243514686 SNP Detail

Summary

• ID
  rs243514686
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156040251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGGCTT TAAGTGCTGA
  GGCATCTAGC TAGACAGTCC GTGTCGTGTC CCCCCCCCCC CCCCCCGCCC CCCCAAGGGT
  TTCTCTGTGT AGCCCTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG ACTTGGAACT
  CAGAAATCCG CCTGCCTCTG CCTCCCAAGT GCTGGGATTA AAGGCATGCG CCACCACGCC
  M
  GGCTGTCTCT TTCTCTCTTT CTTTTTTCTT TTTCTTTCTC CCTCTTTGTT TGTTTTTCTT
  TGTAGCTTTT CTGCCATCAA GATAGTTTCA GTCTTAAGTT CCCTTCCCTC TTTGGAACCT
  CATTCCCTAA TGTGCTCTCC CGGGCTCTTG GGCCTTCCTT CCTGTGTTGA GTGCATAGCT
  GCAAAACACT TCGTCTGTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320578155	CHEV_2_156024067	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243514686					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156040251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12545	CpG island 12545	1034 bp distal
Gm75148	predicted gene, 75148	1614 bp upstream
Phf20	PHD finger protein 20	within coordinates
Rr374122	regulatory region 374122	978 bp upstream
Rr397432	regulatory region 397432	1572 bp downstream
Rr568209	regulatory region 568209	1679 bp distal
Rr568210	regulatory region 568210	1138 bp distal
Rr568211	regulatory region 568211	776 bp proximal
Rr568212	regulatory region 568212	1591 bp proximal
Tssr21145	transcription start site region 21145	1556 bp downstream
Tssr27045	transcription start site region 27045	1770 bp upstream