rs243516888 SNP Detail

Summary

• ID
  rs243516888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:90653777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGACCTT GAACTCCTGA
  TTCTTCTGTC TCCATCTCTT GATTTCTGGG ATTGCAGGTC TGTGCCACTG GGTTGGGCTG
  TCTTCCTGAG ATTTAAAGTG AAGTTACTAC AGGGGCTGGA GAGATGACTC AGTGAATTAG
  AGCACAGAGG ACTGTGGCTC AATTCCCTGC ACCTATGTGG TAGCTCACAA TTAGCTGTAA
  Y
  TTCAAATCTT TAGGATCTGT ACACATGTAT ACATACATAC ATACATACAT ACATACATAC
  ATACATACAT GCAAACCACA CAGACACAAA ATGAAAATAA AAAAATAGAT CTTTAAAGTG
  AAGAGACTGC AGGTGGAACT TTGCTGAGAG TCCCTTGGTC TCAGTGAAAC CTCACTCATT
  TGATCACTGC TCTTTGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391274	CHEV_2_90663590	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243516888					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90653777 () rs orientation: forward

Symbol	Name	Function Class
Agbl2	ATP/GTP binding protein-like 2	within coordinates
Rr373531	regulatory region 373531	within coordinates
Rr560574	regulatory region 560574	within coordinates
Rr560575	regulatory region 560575	342 bp proximal