rs243519060 SNP Detail

Summary

• ID
  rs243519060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:23123542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCATCTA TCAGAACCAA TTTTTGCCCA CCTGGGGATG
  ATGCTAACCA CACACACACA CACACACACC CGTGGGAATG TCTAGCCCCA TTTTCAAGTG
  Y
  CTTGAGTGGA TCGTAGCGAG GTGAGTGCAG AGCCATGTTC AGCTTCCTGT TGAGAAGATA
  GGTTCCTGAG TTTGTTGGGT TCTTGGGGTT TGCTTGTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325768050	CHEV_19_23220668	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243519060					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23123542 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klf9	Kruppel-like transcription factor 9			Intron
				Noncoding-Transcript-Variant
Rr545293	regulatory region 545293			within coordinates