rs243540979 SNP Detail

Summary

• ID
  rs243540979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73073042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTCCTAG CCCGGCCCTC
  TGTGCCTGCC GCGCCTATAA GGCCTGGGTG GGCCGGGCCA CAGCACACAC AGTCCCTGCC
  ATGGCGCTCA GCGAGCCTAT CTTGCCGTCC TTTGCCACTT TCGCCAGCCC GTGCGAGCGC
  GGCCTCCAGG AGGTGAGGGC AGCGAGGGTC CGCGGGCGGC GGGGTAGCAA GGTACCAGGC
  Y
  ACAGGGTGCA GGAGCCAGTA CTGGAGATGA CAAGGTCCAG GGTGCTGACC GCCTCAGGGA
  GTTAGACTTC AGGCTGTGGG ACAGGAGGTG GGTGCAGGGA CTGAGGACAC GCGCGCTGAA
  GGGATGCCGT GCACCGGGTG CAGATCTTGA GGGCCTAGTT GTTAGACTTT GGGGTGCAGG
  GTAGCAGGAG GCACCCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375129534	MGP_WTSI_8_74843097	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243540979					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375129534	MGP_WTSI_8_74843097	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73073042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	within coordinates
Gm63983	predicted gene, 63983	1339 bp upstream
Klf2	Kruppel-like transcription factor 2 (lung)	within coordinates
Rr382265	regulatory region 382265	1525 bp downstream
Rr400967	regulatory region 400967	71 bp downstream
Rr665300	regulatory region 665300	1350 bp distal
Rr665301	regulatory region 665301	849 bp distal
Rr665302	regulatory region 665302	155 bp distal
Tssr2606	transcription start site region 2606	290 bp upstream
Tssr77968	transcription start site region 77968	306 bp downstream
Tssr77969	transcription start site region 77969	283 bp downstream
Tssr77970	transcription start site region 77970	127 bp downstream
Tssr77971	transcription start site region 77971	335 bp upstream
Tssr77972	transcription start site region 77972	385 bp upstream
Tssr77973	transcription start site region 77973	422 bp upstream
Tssr77974	transcription start site region 77974	478 bp upstream
Tssr77975	transcription start site region 77975	628 bp upstream
Tssr77976	transcription start site region 77976	867 bp upstream