rs243545177 SNP Detail

Summary

• ID
  rs243545177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98177863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCAAGGAAA CCAGGAAGAC CACACTTCTT
  GGGGGGGGGG GGGGGGACAC TTGCTTTGTA CTGTTTAGAG AGAGACCTGG CTTTTCAAAA
  TAAAAACACA AGCCCTCATT TCTCAGGAAA TGCAAGCCAC ATTGGGTATA TTAAGGCTTT
  Y
  CCCCCCCCCC CCTGGCTCCC AGTGTGATCA GGATAAAATT AGGCAAACTT TAGAATGTCC
  GTGGGGGTCT AGGGGGAGTA TGATAAAGAG GCACAAAAGT TCCTGGGAGG AAACGAGCTG
  CAGGTGGCCA CACTACCGTT TCCCAAAAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321623273	CHEV_5_98459023	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243545177					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98177863 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	372 bp proximal
Gm42759	predicted gene 42759	646 bp upstream
Rr615102	regulatory region 615102	1681 bp distal
Rr615103	regulatory region 615103	948 bp proximal
Tssr1554	transcription start site region 1554	948 bp downstream
Tssr47433	transcription start site region 47433	691 bp upstream
Tssr47434	transcription start site region 47434	721 bp upstream
Tssr47435	transcription start site region 47435	1091 bp upstream
Tssr47436	transcription start site region 47436	1260 bp upstream
Tssr47437	transcription start site region 47437	1295 bp upstream
Tssr51988	transcription start site region 51988	566 bp downstream
Tssr51989	transcription start site region 51989	613 bp downstream
Tssr51990	transcription start site region 51990	626 bp downstream
Tssr51991	transcription start site region 51991	723 bp downstream
Tssr51992	transcription start site region 51992	793 bp downstream
Tssr51993	transcription start site region 51993	966 bp downstream
Tssr51994	transcription start site region 51994	990 bp downstream
Tssr51995	transcription start site region 51995	1133 bp downstream
Tssr51996	transcription start site region 51996	1293 bp downstream
Tssr51997	transcription start site region 51997	1331 bp downstream
Tssr51998	transcription start site region 51998	1371 bp downstream
Tssr51999	transcription start site region 51999	1406 bp downstream
Tssr52000	transcription start site region 52000	1427 bp downstream
Tssr52001	transcription start site region 52001	1447 bp downstream
Tssr52002	transcription start site region 52002	1467 bp downstream
Tssr52003	transcription start site region 52003	1509 bp downstream