rs243549555 SNP Detail

Summary

• ID
  rs243549555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109748543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCC GGGCCCAGCG GCGCGGCGCC
  R
  CCTCTCTGCG CTGCGCCCTG CAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320456105	CHEV_2_109758355	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243549555					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109748543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	within coordinates
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Coding-Synonymous
Rr397176	regulatory region 397176	539 bp downstream
Rr562509	regulatory region 562509	541 bp distal
Rr562510	regulatory region 562510	within coordinates
Rr562511	regulatory region 562511	414 bp distal
Rr562512	regulatory region 562512	375 bp distal
Rr562513	regulatory region 562513	within coordinates
Rr562514	regulatory region 562514	1823 bp proximal
Tssr19307	transcription start site region 19307	606 bp downstream
Tssr19308	transcription start site region 19308	560 bp downstream
Tssr19309	transcription start site region 19309	542 bp downstream
Tssr19310	transcription start site region 19310	512 bp downstream
Tssr19311	transcription start site region 19311	462 bp downstream