rs243559662 SNP Detail

Summary

• ID
  rs243559662
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66208440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TTTATGCAAC
  CAATCCAGCT TCTGGGAAAG GATCCATTGT GTAATACTGG GGCTTCAGCC TGTGTCCCCT
  GGCTCAGGGC AGCCGGCCCA GTGGTGGCAG TGGCCCCTTG GCAGAGTATG CTAGTTCAGG
  CTTAGAGGCA ACAGGCATGT GAAAGGAATT TGCTGGAGCC AATGGGCTTG TCCTCCTGAA
  R
  GGGCTTTCTG GGGCGGGGGG TGGGGGTGGG GATGGGGGCT CACTGCTAAT CTCAGGCTTT
  GTCCTTCCCC TTTCTAGTTC TGCCTTCTCT GCAGTCCTAA ATTCCTTCCC TTCCCATTTT
  GCTTTTACCC CACCCCCTCC CCAATCCATA CTCAGCCTGG TGGCACAAGC GTTGCCCAGA
  GATGGTGAGA TGGATTGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss391367321	MGP_WTSI_14_66589828	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs243559662					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367321	MGP_WTSI_14_66589828	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66208440 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Cpgi6638	CpG island 6638	1893 bp distal
Rr297400	regulatory region 297400	239 bp distal
Rr297401	regulatory region 297401	160 bp proximal
Tssr126247	transcription start site region 126247	1253 bp downstream
Tssr126248	transcription start site region 126248	1199 bp downstream
Tssr126249	transcription start site region 126249	1170 bp downstream
Tssr126250	transcription start site region 126250	457 bp downstream
Tssr126251	transcription start site region 126251	400 bp downstream
Tssr126252	transcription start site region 126252	382 bp downstream
Tssr126253	transcription start site region 126253	370 bp downstream
Tssr126254	transcription start site region 126254	336 bp downstream
Tssr126255	transcription start site region 126255	322 bp downstream
Tssr126256	transcription start site region 126256	88 bp downstream
Tssr126257	transcription start site region 126257	58 bp upstream
Tssr126258	transcription start site region 126258	122 bp upstream
Tssr126259	transcription start site region 126259	173 bp upstream
Tssr126260	transcription start site region 126260	735 bp upstream
Tssr126261	transcription start site region 126261	805 bp upstream
Tssr126262	transcription start site region 126262	826 bp upstream