rs243565565 SNP Detail

Summary

• ID
  rs243565565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46450958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGAGAGC GCGGGTGCCG
  GTGGGGGTGG GGGCGGGGGT CCCGGCACCG GAAGGTCTTA CATCAGCCAG CCCACGTGCG
  ACCCGAGGGC CAGGAGGCGC GCGCGACCCG GGAGGCGGCG CCGCAGTCCG GGCTGAGCTT
  AAGGCGGGTC CCGCCCCGCC CTCCGTGCGC CTCCCAAGTC CGCGCTGCAG CCCGGGCTCC
  S
  GAGCCGAGCG GCGCCGCGCA GGGCCGAGTG GAGCCGAGCA GCCGCCGCGT CGCGTCGCCG
  GTTTAAGCGC AGTGCGGGGC CTTGGCCGGG GGCGGCGGTA GTGAGGCCAG AGCCGCGCTC
  CAGCCCCCTT TTCCCTCCAT GGTTTCTCTC CGCTCCCGCG AGTAACTTGG CTCCGGGGGC
  TCCGCTCGCC CGCACGCCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361391775	MGP_WTSI_4_46463830	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243565565					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361391775	MGP_WTSI_4_46463830	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46450958 () rs orientation: forward

Symbol	Name	Function Class
Anp32b	acidic nuclear phosphoprotein 32 family member B	within coordinates
Cpgi14257	CpG island 14257	within coordinates
Gm69233	predicted gene, 69233	within coordinates
Rr100990	regulatory region 100990	within coordinates
Tssr37119	transcription start site region 37119	71 bp downstream
Tssr37120	transcription start site region 37120	55 bp downstream
Tssr37121	transcription start site region 37121	within coordinates
Tssr37122	transcription start site region 37122	86 bp upstream
Tssr37123	transcription start site region 37123	122 bp upstream
Tssr37124	transcription start site region 37124	160 bp upstream
Tssr37125	transcription start site region 37125	188 bp upstream
Tssr37126	transcription start site region 37126	1202 bp upstream
Tssr41577	transcription start site region 41577	507 bp downstream
Tssr41578	transcription start site region 41578	1614 bp downstream