rs243568906 SNP Detail

Summary

• ID
  rs243568906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6155405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGAGAG GTAAAGACAG
  ATCAAGCAGT TACCTGTGGA TAACTGCAGA GCCCCTGTGC CTGCTGGACC AGTTTTAGGG
  TCAGGCAGTG GTGCAGTGGT GTTTACCATC CTGCTCTTCC CATCAGAGGC ACACACTGGA
  GAGTACACAA TACTTAGGTC CCACTGTGCC GTTATACTAT TAACCACATG GACTACCAGG
  Y
  CAACTCTGAG CTCACCGTGT GACTCCCCCC AGGGTAGAAG AAACAGAGTG TAATGTTCAA
  AGAAATGTCA CATATTCCTC ACTGCTTAAT AGGGAATTGT AAGATGGTAA GAAGTTTTTC
  TCACACTTGA ACTTGGAGCC AAGGGAAAGG CAGTTAACAG AGCCAGCAAC ACTGAACAAA
  ACGAGCTCGT TGGAGTAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397548372	MGP_WTSI_17_6105130	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243568906					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397548372	MGP_WTSI_17_6105130	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6155405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	1222 bp proximal
Gm65964	predicted gene, 65964	959 bp downstream
Rr340081	regulatory region 340081	595 bp proximal
Rr405018	regulatory region 405018	1586 bp upstream
Tssr142458	transcription start site region 142458	1334 bp upstream
Tssr142459	transcription start site region 142459	1391 bp upstream
Tssr142460	transcription start site region 142460	1434 bp upstream
Tssr142461	transcription start site region 142461	1478 bp upstream
Tssr142462	transcription start site region 142462	1678 bp upstream
Tssr142463	transcription start site region 142463	1694 bp upstream
Tssr142464	transcription start site region 142464	1720 bp upstream
Tssr142465	transcription start site region 142465	1750 bp upstream
Tssr142466	transcription start site region 142466	1778 bp upstream
Tssr146313	transcription start site region 146313	1148 bp downstream
Tssr146314	transcription start site region 146314	1345 bp downstream
Tssr146315	transcription start site region 146315	1359 bp downstream
Tulp4	TUB like protein 4	1123 bp upstream