rs243586224 SNP Detail

Summary

• ID
  rs243586224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96184753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAAGCCC GGAACAACCG
  GTAGTGGCCG TTTCCCCGCG CCGCCCCCCT TTCCGCCCGC TTTGTGTGCG TGTGAAATGT
  GCTGCACATT GCAGATGAAC CCTAAGCCGG GCGAGCCGAG TCTATTGTTC CCCGCGAGGA
  GCCGCCGCGA CCGTGTGGAG CCAGGCGCAG TGCCGCGGCC GGCCCTCGGG GGGCGCTGTG
  Y
  GGCGCTGGCG GCCCGGCCGT GGCGGCGGCA GCAGAGAACG GGAGGCTGGC GGGCAGGCAG
  GCAGGCCGGC GGGCGGCGCG CAGCGGCTCG GCTGCCGCCG GAGCCTGTGC CCGGGGACGC
  CCGGGCCGCC GCCGCCGCCG CCGCGCGTGA ATGTGTGCGA GGGCCCCGCG GAGCCGCGGC
  CCGGATCCAC GCTGTCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss395085944	MGP_WTSI_15_96117303	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs243586224					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395085944	MGP_WTSI_15_96117303	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96184753 () rs orientation: forward

Symbol	Name	Function Class
Arid2	AT-rich interaction domain 2	646 bp upstream
Cpgi7599	CpG island 7599	989 bp distal
Cpgi7600	CpG island 7600	within coordinates
Gm38469	predicted gene, 38469	within coordinates
Gm62599	predicted gene, 62599	1167 bp upstream
Rr391146	regulatory region 391146	476 bp downstream
Rr508523	regulatory region 508523	1887 bp distal
Rr508524	regulatory region 508524	1274 bp distal
Rr508525	regulatory region 508525	677 bp distal
Rr508526	regulatory region 508526	166 bp distal
Rr508527	regulatory region 508527	62 bp proximal
Rr508528	regulatory region 508528	156 bp proximal
Tssr132814	transcription start site region 132814	848 bp downstream
Tssr132815	transcription start site region 132815	105 bp downstream
Tssr132816	transcription start site region 132816	28 bp downstream
Tssr132817	transcription start site region 132817	within coordinates
Tssr132818	transcription start site region 132818	58 bp upstream
Tssr132819	transcription start site region 132819	376 bp upstream
Tssr132820	transcription start site region 132820	398 bp upstream
Tssr132821	transcription start site region 132821	665 bp upstream
Tssr132822	transcription start site region 132822	894 bp upstream
Tssr136021	transcription start site region 136021	1333 bp upstream
Tssr136022	transcription start site region 136022	1140 bp upstream
Tssr136023	transcription start site region 136023	972 bp upstream