rs243589946 SNP Detail

Summary

• ID
  rs243589946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:42066075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGAAGAC TCCACCTAGA
  GCCCATCTCA GTCTCGGATA ACAGGGGGGA CAAGTGACCC TTATATATAG ATGGCACGGC
  AGCAATAGCC CTAAGTATTG ATATCCAGAC ACACTGTGGC CTCACTACAT GCTGTGAAGG
  ACTTGCAAAT GGCCCAGGAC TGATGGAGGC CACTAAGCAA ATTCTCAGAT GCTCCTGTCA
  Y
  CTCTGGGGCT GGCCTCCTTG AGTTGATAGA TTCCCATCAG ACGCCCGCTG CATGCTCCCA
  TGCAGGGCAG TATCAAGCGA AATATTTTCC TCGTTGTAAT CTCTGTTCAG TCCCTAGAAA
  TCGATGCTTT CCCAGGTGGA GAGGACAAGG AAAGCTACAA AGGCAGAACT GTACAAGTCA
  GAGCCTTAAA TTATTTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325596257	CHEV_18_42092664	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243589946					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:42066075 () rs orientation: forward

Symbol	Name	Function Class
D18Mit104	DNA segment, Chr 18, Massachusetts Institute of Technology 104	343 bp distal
Prelid2	PRELI domain containing 2	Intron