rs243599540 SNP Detail

Summary

• ID
  rs243599540
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90078285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTCATGAG GTAAAGGCCA GCAATGGGAC ACATGTCATG
  GCTTTCTGAC AATCCAGGTT AGTGGCTATG CCCTCATTAG CAACACTTTT GCTCAAATCT
  C
  TCTCTCTCTC TCTCTCTCTC TCTTTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC CTCATTCCCT CTCCATCTC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323794544	CHEV_11_90048773	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243599540					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90078285 () rs orientation: forward

Symbol	Name	Function Class
Gm45883	predicted gene 45883	649 bp upstream
Smim36	small integral membrane protein 36	224 bp upstream
Tssr104108	transcription start site region 104108	199 bp upstream
Tssr104109	transcription start site region 104109	242 bp upstream