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rs243601456 SNP Detail
Summary
  • ID
    rs243601456
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr11:54800578 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCATACCGGT TATGCGCTGG
TACCACCGGA CCACAGTCAG CAACGTCAAG ATGGACATCC TGTCTTACAT GAGGCGGCAG
GCAGCCCTGA GCGCCAGGGG GAAGTAACTG ATGCCCCCAC CCTACCCCTA CCCCCTGCCC
ATCATGCAAG GGCCGAGGAG GGGCTCTTCA GGAAGGAAGC CACATTCCCA GTCATTCTAC
M
CCCACCCCAG ATTCTCTTTC TTATTACATA AAAGACAAGC CTGGCACAAC TGTGTGTCTG
AACCACTGTG GACACGTGAC AATTGTCCCA GTGTGTGCAT GGCTACACAG CCACGTATCT
GCCTGCTTGA AACCCAGGGA TGGTCCATCT GTGTTTACGG CTTGGCACAA CACCCTCATA
TTTTTTTCAG CTTTCTGTTC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383428911 MGP_WTSI_11_54723254 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243601456 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383428911 MGP_WTSI_11_54723254 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:54800578 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gpx3 glutathione peroxidase 3 within coordinates
Tnip1 TNFAIP3 interacting protein 1 1033 bp downstream
Tssr3502 transcription start site region 3502 108 bp upstream
Tssr3503 transcription start site region 3503 363 bp upstream
Tssr101561 transcription start site region 101561 1195 bp downstream
Tssr101562 transcription start site region 101562 1148 bp downstream
Tssr101563 transcription start site region 101563 1136 bp downstream
Tssr101564 transcription start site region 101564 1115 bp downstream
Tssr101565 transcription start site region 101565 685 bp downstream
Tssr101566 transcription start site region 101566 639 bp downstream
Tssr101567 transcription start site region 101567 276 bp downstream
Tssr101568 transcription start site region 101568 202 bp downstream
Tssr101569 transcription start site region 101569 119 bp downstream
Tssr101570 transcription start site region 101570 68 bp downstream
Tssr101571 transcription start site region 101571 within coordinates
Tssr101572 transcription start site region 101572 41 bp upstream
Tssr101573 transcription start site region 101573 78 bp upstream
Tssr101574 transcription start site region 101574 92 bp upstream
Tssr101575 transcription start site region 101575 140 bp upstream
Tssr101576 transcription start site region 101576 154 bp upstream
Tssr101577 transcription start site region 101577 183 bp upstream
Tssr101578 transcription start site region 101578 266 bp upstream
Tssr108007 transcription start site region 108007 1178 bp upstream
Tssr108008 transcription start site region 108008 1117 bp upstream
Tssr108009 transcription start site region 108009 1101 bp upstream
Tssr108010 transcription start site region 108010 681 bp upstream
Tssr108011 transcription start site region 108011 65 bp upstream
Tssr108012 transcription start site region 108012 within coordinates
Tssr108013 transcription start site region 108013 33 bp downstream
Tssr108014 transcription start site region 108014 40 bp downstream
Tssr108015 transcription start site region 108015 123 bp downstream
Tssr108016 transcription start site region 108016 175 bp downstream
Tssr108017 transcription start site region 108017 226 bp downstream
Tssr108018 transcription start site region 108018 241 bp downstream
Tssr108019 transcription start site region 108019 277 bp downstream
Tssr108020 transcription start site region 108020 333 bp downstream
Tssr108021 transcription start site region 108021 353 bp downstream
Tssr108022 transcription start site region 108022 364 bp downstream
Tssr108023 transcription start site region 108023 617 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory