rs243602523 SNP Detail

Summary

• ID
  rs243602523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTTAAA TAACACTTGT
  GTCCCAAACT ACTCTTCGAA TCAGTTCTTG CATAAAGTCA AAGACTCTCC TACATTAAAC
  AAGCCATAGG TTGGAATATG ATTTTTCCAA TAAGGAATAT GAAGAGAAAC TCAGACTTTT
  ATTTTATTTC GGTTTTTCAA GACAGGATTT CGATGTGTCG CCCTGGCTGT CCTGGAACTT
  R
  CTCTGTAGAC CAGGTGGGCC TCGAACTCGA ACTCAGAAAT CCGCCTGCCT CTGCCTCCCA
  AGTGCTGGGA TTAAAGGGTG TGCCACTGCC TGGCAGGAGC TCAGAGTTAC TGTAACATCT
  TTGTACCTTA TTTTGGATCT GTGTTTCGCC ATATTCTCAG GTCAGTTGTT GGTGGGGGTG
  GTGGAAGAAA AGCAAAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535815	CHEV_10_128183108	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243602523					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1829 bp distal
Cpgi2419	CpG island 2419	1650 bp proximal
Dgka	diacylglycerol kinase, alpha	1197 bp upstream
Gm31504	predicted gene, 31504	170 bp downstream
Gm66065	predicted gene, 66065	within coordinates
Pym1	PYM homolog 1, exon junction complex associated factor	Intron
Rr385481	regulatory region 385481	1273 bp upstream
Rr402364	regulatory region 402364	1103 bp downstream
Rr441312	regulatory region 441312	1988 bp distal
Rr441313	regulatory region 441313	1246 bp distal
Rr441314	regulatory region 441314	130 bp distal
Rr441315	regulatory region 441315	39 bp proximal
Rr441316	regulatory region 441316	287 bp proximal
Rr441317	regulatory region 441317	1347 bp proximal
Rr441318	regulatory region 441318	1913 bp proximal
Tssr96440	transcription start site region 96440	1230 bp downstream
Tssr96441	transcription start site region 96441	1029 bp downstream
Tssr96442	transcription start site region 96442	818 bp downstream
Tssr96443	transcription start site region 96443	405 bp upstream
Tssr96444	transcription start site region 96444	1736 bp upstream
Tssr96445	transcription start site region 96445	1798 bp upstream
Tssr99945	transcription start site region 99945	1967 bp upstream
Tssr99946	transcription start site region 99946	1943 bp upstream
Tssr99947	transcription start site region 99947	1800 bp upstream
Tssr99948	transcription start site region 99948	1770 bp upstream
Tssr99949	transcription start site region 99949	1165 bp upstream
Tssr99950	transcription start site region 99950	994 bp upstream
Tssr99951	transcription start site region 99951	971 bp upstream
Tssr99952	transcription start site region 99952	967 bp upstream
Tssr99953	transcription start site region 99953	930 bp upstream
Tssr99954	transcription start site region 99954	586 bp upstream
Tssr99955	transcription start site region 99955	553 bp upstream
Tssr99956	transcription start site region 99956	181 bp downstream
Tssr99957	transcription start site region 99957	248 bp downstream
Tssr99958	transcription start site region 99958	1576 bp downstream
Tssr99959	transcription start site region 99959	1668 bp downstream