rs243611038 SNP Detail

Summary

• ID
  rs243611038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152681818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATACCCTAA GGACAGAGAG TAGGTTGTCC
  CCACCCTCAA CATCTGCCTG GAGGTTTGAG GTCTGTCCTG GGGTAAAGAC ACAAGAGCAT
  ATGTAACTGC ATGGGTGGAG AATGACTGTC TTACGGGAGG TGACTGCTGG ACTTGGGAAA
  R
  AAGACGAGGT CATGGGCTGC AGCACGTGAG CCCTTCAGGC CAACTGGGAG AAGCTAGATG
  AGCTAGCTCT GAAGGCTAGG TTGGGTAAGT CTCATGCACA GATCTGAGAG TGTAGCTGGC
  AGCAGGAGCC AGCCAGTAGA AGCCTGCACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068338	CHEV_1_154653197	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243611038					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152681818 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	1456 bp proximal
Tssr9423	transcription start site region 9423	1705 bp upstream
Tssr9424	transcription start site region 9424	1752 bp upstream
Tssr9425	transcription start site region 9425	1760 bp upstream
Tssr9426	transcription start site region 9426	1810 bp upstream
Tssr9427	transcription start site region 9427	1838 bp upstream
Tssr9428	transcription start site region 9428	1851 bp upstream
Tssr9429	transcription start site region 9429	1881 bp upstream