rs243613602 SNP Detail

Summary

• ID
  rs243613602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59680329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTGACT
  TTTCAGGGTT TTTAATAGTC ACATGCAGAG GTCTGGTTCA TTTCAGCTCC TTCACTGCCA
  AACCTGGGGG TAGGGACTGC TTCAGCTTCT CTGCCTTCTC CTTGTCTGTG ATAACCAGGG
  TCTTACTTTA CTTTTTAAAG TCACAGCCCA TACTAAATTT TTCTCAAACA GAAAGGGTGA
  Y
  TAGTCATACT TGAGTATGAG TTGGTGATCA CAGTTTGTAT TACTGTTACT GGTCCATAAA
  CCCACTGACT TAATTTTCCT GTTTTCAAAA GAATTAAGAA ACAGTTTGGT AAAGGGAAGT
  GTGTTTATTT CTAGATTAGC TGATAGCAGT GGTGGGAGAA CAGTCTAAAT TCCTCCTTGC
  TATGCCAGTG GTCTTCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324646630	CHEV_14_60061717	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243613602					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59680329 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	1549 bp distal
Gm45935	predicted gene, 45935	2000 bp upstream
Rr404137	regulatory region 404137	1822 bp downstream
Rr493050	regulatory region 493050	1889 bp distal
Rr493051	regulatory region 493051	1114 bp distal
Setdb2	SET domain, bifurcated 2	2000 bp upstream
Tssr125904	transcription start site region 125904	1884 bp downstream
Tssr129008	transcription start site region 129008	1993 bp upstream
Tssr129009	transcription start site region 129009	1783 bp upstream
Tssr129010	transcription start site region 129010	1772 bp upstream
Tssr129011	transcription start site region 129011	1573 bp upstream
Tssr129012	transcription start site region 129012	1570 bp upstream
Tssr129013	transcription start site region 129013	1563 bp upstream