rs243616443 SNP Detail

Summary

• ID
  rs243616443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:101295222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGCCAGC TTGGCCGCCT
  CCGGTGCCCT CGGCCCCTGC TGCCCAGCCC AGCGTCCTGC CGGGCGGCCC GGCTTACCTC
  CGCGAAGCTG CTTGCCCGGG AGAGGAAAGC TCACAGGAGC TGAGGTACGG ACGAAGCGAC
  CTAGCCCCGA GCCCCCTTGG CACGCACACT GCCGCCGCCG CCGCTAGCCA CTCGCTTCAG
  R
  GTCCCCAGCC GCACGGGCGG CCACGCGACC CCAGGGCGCC TGGGAAAAGC CTGCACCGCC
  GCGCCGCGCC GCGCCGCCGC ACCGCACCGG GCAGCGCCGA GCTGCCCCGA CCCGCGCTCT
  TGCCGGCCCG CAGCTCCGGC GCCCGGACTC CGGGGCGGTG GCGATCACAG CCACCACGCT
  TGGTTCTCGG CGCGGGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404192026	MGP_WTSI_X_99446955	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs243616443					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404192026	MGP_WTSI_X_99446955	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:101295222 () rs orientation: forward

Symbol	Name	Function Class
Cited1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	within coordinates
Cpgi22880	CpG island 22880	within coordinates
Gm14858	predicted gene 14858	1035 bp upstream
Rr8160	regulatory region 8160	within coordinates
Rr8161	regulatory region 8161	1978 bp proximal
Tssr163910	transcription start site region 163910	819 bp upstream
Tssr163911	transcription start site region 163911	657 bp upstream
Tssr163912	transcription start site region 163912	242 bp downstream
Tssr163913	transcription start site region 163913	448 bp downstream
Tssr163914	transcription start site region 163914	538 bp downstream
Tssr163915	transcription start site region 163915	572 bp downstream