rs243621621 SNP Detail

Summary

• ID
  rs243621621
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99942639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTACCCT TCTGTCTAGT
  TCTCCTAGTT CAATACATGT AAACTCAGTG CTTTGCTCTG GGCATCCAAG CTCCAGCTTG
  GATGTGCATA CAGATGTTCT AAGGACCGAA GGTTCAAAAG CATGAAAGAG GGGCTACATT
  ATATCATTGA ATCCAAGGGC TTAGATGCTA GGAAAGAAAA TATTGAAATG CCCTGAAATC
  R
  CAGGACTATT CTTTAGCAGG AGTGCCAAGC TAGAAATGGG TGGTGATGGA AGAGAACAGA
  AGATCTGAGG ATGAGGTGGC CCAAGCTAGA GATGTATAAA GGTTAGGTAA TTATAGGCAC
  CAGCCGATAC CAACTGCACT CCAGTACATC ACCCAAGCTC CTGTGGCTTT GGCTCGCAGC
  CAAAGCTTCT TCTTTACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384449186	MGP_WTSI_11_99913127	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243621621					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384449186	MGP_WTSI_11_99913127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99942639 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	792 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	777 bp distal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	926 bp distal
Gm11571	predicted gene 11571	473 bp upstream
Krt31	keratin 31	1262 bp upstream
Tssr104894	transcription start site region 104894	291 bp upstream
Tssr104895	transcription start site region 104895	447 bp upstream
Tssr104896	transcription start site region 104896	468 bp upstream
Tssr110726	transcription start site region 110726	1256 bp upstream