rs243632698 SNP Detail

Summary

• ID
  rs243632698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167225359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACTGTCAT CTCCCCCAAG ATGTTTATAG ATGGAAACGA
  TCATGTTAGC AAGGGGGGCG GGGAATGAAA GACGGCAGGA GGGGGAAACG ACCATGTTAG
  Y
  GGGGGTGGGG GGGGGGATGA AAGAAGGCAG GAGGGAGAAG AAAATGAAGA TGCTTTAATG
  CTAGCACTCA GAAGGCTGAA AGTTCAAGGC CAGCCTGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356504129	MGP_WTSI_2_167208939	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243632698					SNP	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356504129	MGP_WTSI_2_167208939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167225359 () rs orientation: forward

Symbol	Name	Function Class
Rr397506	regulatory region 397506	277 bp upstream
Rr570568	regulatory region 570568	1348 bp distal
Rr570569	regulatory region 570569	17 bp proximal
Tssr768	transcription start site region 768	1435 bp downstream
Tssr21803	transcription start site region 21803	1541 bp downstream
Tssr21804	transcription start site region 21804	623 bp upstream
Tssr21805	transcription start site region 21805	645 bp upstream
Tssr27773	transcription start site region 27773	120 bp downstream