rs243633590 SNP Detail

Summary

• ID
  rs243633590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148989146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGAAG AGAGGGGAGC
  GAGAGGAGAG AGGGGGGGAA AAAAAAAAGT TGCCTCAGAA CTGCTGCGCC CAGCTTCCCC
  CGCCCGCCCG CCCGCCTTGT TTTCTCTCCA GCCAGCAGCG CCCGGCCGAG TCAGCCATGT
  TCCAGCGAGC GCAGCGGCGC CGCTCCCCCC CACACGGCCG CCCCGCTCGC CCGCCGCCTC
  R
  CCCGGCCCGA GCCGCCCCGC ACGGCCGCCC CCGGCCCACC CGCGGCCGCC CTCGCCCGCA
  GCGGCGCCCC GCCCGCCGCC CCGCGCTCCC CGCCGCGGCC GCCCATACAG CGGGGAAGCG
  CCGCTGCCCG CCGGCTCGCT CGCTCCGCGC ACGCCGCCTG CCCGAAACGC TCGGCCCTGG
  GGGCCACAAA CACGTTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss367145519	MGP_WTSI_5_149863912	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs243633590					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367145519	MGP_WTSI_5_149863912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148989146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17090	CpG island 17090	within coordinates
D5Mit287	DNA segment, Chr 5, Massachusetts Institute of Technology 287	1523 bp proximal
Hmgb1	high mobility group box 1	within coordinates
Rr378801	regulatory region 378801	320 bp downstream
Rr399531	regulatory region 399531	674 bp upstream
Tssr1757	transcription start site region 1757	878 bp upstream
Tssr49872	transcription start site region 49872	859 bp upstream
Tssr54613	transcription start site region 54613	1731 bp upstream
Tssr54614	transcription start site region 54614	1023 bp upstream
Tssr54615	transcription start site region 54615	946 bp upstream
Tssr54616	transcription start site region 54616	881 bp upstream
Tssr54617	transcription start site region 54617	712 bp upstream
Tssr54618	transcription start site region 54618	628 bp upstream
Tssr54619	transcription start site region 54619	357 bp upstream
Tssr54620	transcription start site region 54620	702 bp downstream
Tssr54621	transcription start site region 54621	724 bp downstream