rs243640253 SNP Detail

Summary

• ID
  rs243640253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3122162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGGCAGC CTGGTCTACT
  CAGTGAATTC CAGGAAGAGT CAGGGTTATA CAGAGAAACC CTGTCTCAAA AAATAAAACC
  CAAACCCAAG CCAACCAACC AACCTATGCC TTAAAATAGT AAAAGAGGGG CTGGAGAGAT
  GGCTCAGCAT TTAAGAGCAC TTACTGCTCT TCCAGAGGCC CTGAGTTCAA TTCCCAGCAA
  Y
  CACGTGGTGG CTTACACCAT CTGTAATGGG ATTTGATGCC CTCTTCTGGT GTGTGTCTGA
  AGACAGCTAC AGTGTACCTA TATATAATAA ATAAATCTTT TTAAAAAATT GTAAAAGAAC
  TGAAATCATA CTAAATAGCA TCCTGTGACC ATAATGGAAT ACACTAGAGA CCTTAACTGC
  GAGAGTTCAA GGTCAGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss382237223	MGP_WTSI_11_3072165	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs243640253					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237223	MGP_WTSI_11_3072165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3122162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	144 bp proximal
Cpgi2458	CpG island 2458	1102 bp proximal
Rr441480	regulatory region 441480	1950 bp distal
Rr441481	regulatory region 441481	within coordinates
Rr441482	regulatory region 441482	880 bp distal
Rr441483	regulatory region 441483	33 bp proximal
Rr441484	regulatory region 441484	509 bp proximal
Rr441485	regulatory region 441485	1029 bp proximal
Rr441486	regulatory region 441486	1811 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	633 bp downstream
Tssr106449	transcription start site region 106449	1157 bp downstream