rs243644353 SNP Detail

Summary

• ID
  rs243644353
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104126470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCCATAA GCGTAACATG
  CTTTGCAGCA CATTTTACGA GCATCAAAGA CACCAGGGCA CCAAGGGGTT CTTTTTTTTA
  CCCTGCGCTT CAACAAATAC TGTAGATTTG AAAGCTTTAC AAAGGCATTT GCTCGGCTGG
  GCACCTGGGT CCTCCTTCCA AATCCAGACG ACACAACAGC TCCACTGCCT CATACCACAC
  W
  CTGTACCTCA CTGGGACTCA GACACCTGAG CCACCTAGAC CCACAGAGTG GGACTGTCAG
  CTCCCAGACG TCTGCGGTCG TGCACGACGC ACTGGGCCAG CTGAGCCCTC CCAGGAGCTT
  TCAGTGGTAA CCTCGGCCCT CGATCCGGCG CCGAGTCTCC ATAGTAAAGC CCTTTCTCCC
  CGTTAGAAGA CGCAAATACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359085532	MGP_WTSI_3_104023077	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243644353					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359085532	MGP_WTSI_3_104023077	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104126470 () rs orientation: forward

Symbol	Name	Function Class
2010002M09Rik	RIKEN cDNA 2010002M09 gene	1449 bp upstream
Cpgi13643	CpG island 13643	72 bp proximal
Gm66179	predicted gene, 66179	505 bp upstream
Magi3	membrane associated guanylate kinase, WW and PDZ domain containing 3	Intron
Rr397911	regulatory region 397911	1203 bp upstream
Rr582475	regulatory region 582475	15 bp proximal
Rr582476	regulatory region 582476	939 bp proximal
Rr582477	regulatory region 582477	1460 bp proximal
Tssr31043	transcription start site region 31043	1717 bp upstream
Tssr34876	transcription start site region 34876	1192 bp downstream
Tssr34877	transcription start site region 34877	1206 bp downstream