rs243662475 SNP Detail

Summary

• ID
  rs243662475
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6340090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGGGAG CGGTTACTGG
  CCGGACAAGG AGCCGCGCTG CCCCTAGGCT GAGGACGCTG ACCTGTCAGT CCCTGGCCGC
  GTTTTTGACA GGAACACCGT TGTGCAAACT GAAGCTCAGG CACGAAGGTG CCCTACTCTC
  CCTAAATTTT TTGTTCTCCT TGGTACCCTT AACACCACTC CTAGGTGCCC ATTCCCCCCC
  W
  CCCCCACCCC CAAGTATCCC TTTCCCTCAA GGTATCATTT TCCTAGTACC CAGTGCCTTT
  CTTATTTTGT CACCTTTCCT GCTTGCCTCC CCTATGCTGC CCTCATCCTT CTAAGGTTCC
  TTCTCATAGT AGTTAGAGAC AGTCTTTGGT GATGCCTTTA ACTCATTTAT GTTATTGCAG
  AAAATTTCAT AGGGACACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SWR/J
ss382296052	MGP_WTSI_11_6290093	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SWR/J
rs243662475					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382296052	MGP_WTSI_11_6290093	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6340090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	18 bp distal
Rr246943	regulatory region 246943	within coordinates
Tssr100241	transcription start site region 100241	1010 bp downstream
Tssr100242	transcription start site region 100242	984 bp downstream
Tssr100243	transcription start site region 100243	953 bp downstream
Tssr100244	transcription start site region 100244	693 bp downstream
Tssr100245	transcription start site region 100245	655 bp downstream
Tssr100246	transcription start site region 100246	637 bp downstream
Tssr100247	transcription start site region 100247	517 bp downstream
Tssr100248	transcription start site region 100248	494 bp downstream
Zmiz2	zinc finger, MIZ-type containing 2	within coordinates