rs243693774 SNP Detail

Summary

• ID
  rs243693774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4004939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCCAGGC AGATGTGCCT TGCGCTCAGC
  CAGGACCGGG AAGCCCCCCT CCCGAGGCCC GCCGCCCCCC TTCGCTGCAG AAGCGCTGCC
  AGGAAGGTCA CGTCCAAGGC TCACCCACCC AACCCTGCAA GTATAAAAGA AGAGAGAAGA
  R
  CGACAGGGAC CAAACGGGAG GCGACGGAAG AGAAAAGAGG TTAAGAGCAG TGACTAAGAG
  AGGCCACTGA ACATCTTTGT CCCCAGAGAG CTGCCTTTCC GCGACAGGTA AGGGTGTCTC
  AGCTCTGGAC AGCTCCCTTA CTCTGAGCTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873012	CHEV_12_3954939	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243693774					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4004939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4369	CpG island 4369	within coordinates
Pomc	pro-opiomelanocortin-alpha	12 bp upstream
Rr366691	regulatory region 366691	within coordinates
Rr462232	regulatory region 462232	427 bp proximal
Rr462233	regulatory region 462233	1515 bp proximal
Rr462234	regulatory region 462234	1599 bp proximal
Tssr112541	transcription start site region 112541	4 bp upstream