rs243727201 SNP Detail

Summary

• ID
  rs243727201
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170785417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAGAAG CTATACCTTG
  GGAGGTCTCA GTATAACACA GACATAAAAC CTTATGCAAG TAATCTACAC AGACAATTAT
  CCCAGGGCCC TATGGTTTGT GAAATTCTGA AGTTTATCTA GAAGAGAACA GCAGCCAAGA
  AAATCTTGAA ACAAACGAAT GAGAGAAAAC AGGGCTTTAT ACACATCAAA ATATAATAAA
  G
  ATAATGATAA TAATAATGAT GATGATGTGA TGATGATGAT GATGATGATG TGTATGCTAC
  TGAGGTGGGA AGAAAGAAAT GAAATAAGGC AACGGAAGAG GACTGGACAT GGGTGTAGAC
  CTGTGTGTGG GAGTTGATAA TGATATTTGA ACCATTTCCA ATCATTTGCT CAAGGAATAA
  CCTTGGAATA CCTAGCCTCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ
ss352376576	MGP_WTSI_1_172887979	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ
rs243727201					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352376576	MGP_WTSI_1_172887979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170785417 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	769 bp downstream
Gm70986	predicted gene, 70986	within coordinates
Rr20517	regulatory region 20517	984 bp proximal
Rr20518	regulatory region 20518	1584 bp proximal
Rr20519	regulatory region 20519	1983 bp proximal
Tssr14949	transcription start site region 14949	1047 bp downstream
Tssr14950	transcription start site region 14950	1891 bp downstream
Tssr14951	transcription start site region 14951	1969 bp downstream