rs243731687 SNP Detail

Summary

• ID
  rs243731687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79992221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGAAA CAGTGTTGTG
  TCCCAGGAGC CCACATCTGA AGCAATTAAG CAAGATCCAA CTCTCCAGGT CAAATCCTAG
  CATCTCTAGG GCCAAGATGT TAGGTTCAGA TGCCCAAGAT AACAGAGACT GACCCTGTGA
  GGAGAGCGAT GTTTGGAGCA CGTTGAAAAC GGTCTGGGTG TTGTGCCAGG CTGTAGATGG
  Y
  CTTTTTCTCG TGGAAGACGC TGTCTCTGCC TCCCAGGCTA GATAAAATGG GCTTTCCCCC
  CACGATCCCA CGGCCACCCG TGCCTTCCAG CTCTGTACCC AGCACTCTGT GAAACTATCA
  CTTTTGGTTT TGTCTCCCTT TTCTGCAAAG ACTGTTAGTT CTACTACGTC CTGGGGCATG
  GTGGGGAGAA CGCTGCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372043647	MGP_WTSI_7_87487359	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243731687					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372043647	MGP_WTSI_7_87487359	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79992221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	1975 bp distal
Cpgi19332	CpG island 19332	410 bp proximal
Hddc3	HD domain containing 3	631 bp upstream
Rr400404	regulatory region 400404	470 bp upstream
Rr649870	regulatory region 649870	1764 bp distal
Rr649872	regulatory region 649872	1436 bp distal
Rr649873	regulatory region 649873	150 bp proximal
Rr649874	regulatory region 649874	594 bp proximal
Tssr67435	transcription start site region 67435	618 bp upstream
Tssr67436	transcription start site region 67436	692 bp upstream
Unc45a	unc-45 myosin chaperone A	1473 bp upstream