rs243743096 SNP Detail

Summary

• ID
  rs243743096
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84169349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGAGCGT GCGCCGAGCG
  AGGAGGCGTC CTCCCACCAA TCCTAACTGG AAATTGCACG CCTGCGCACT GGCTGCTGGA
  CGCCTCGACA GGCCTGTGGC AGAGCACCGG GGTCCACCTT TGCCCTAACA AAAGGGCATT
  GACGACCAAT CAGGATTTTT GGGCGTGTCC TAAAAAAGCA GCGACCAATC ACGGCGCAGA
  M
  GAGAAGATGC GCCTAAGAAA GCGGTCCTCG CTGAGCATCT TTTGTCTCGC CAGGAACCTG
  GAAAGTGGGG TGGAAAGTCA CTCTAGGTTA AAAAAAGAGA GACGGGGAGA GAGGGAGGGA
  AACAGAGACA GAATTTCTGG AAATTGCCGT GACCAGACTC TAGGAGAGAG ATATTTCGTT
  CACATTCAAG AACAGAGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375378195	MGP_WTSI_8_85966619	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243743096					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375378195	MGP_WTSI_8_85966619	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84169349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20643	CpG island 20643	within coordinates
Rr186940	regulatory region 186940	within coordinates
Rr401003	regulatory region 401003	9 bp downstream
Scoc	short coiled-coil protein	within coordinates
Tssr82001	transcription start site region 82001	284 bp upstream
Tssr82002	transcription start site region 82002	253 bp upstream
Tssr82003	transcription start site region 82003	213 bp upstream
Tssr82004	transcription start site region 82004	177 bp upstream
Tssr82005	transcription start site region 82005	126 bp upstream
Tssr82006	transcription start site region 82006	90 bp upstream
Tssr82007	transcription start site region 82007	53 bp upstream