rs243749299 SNP Detail

Summary

• ID
  rs243749299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:113658805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGGACAT GGCCAAGGAA
  TGACAAAGTT GGAGCCCTGT CCAGCTCCAG GCAAGGCTCC AACCTGAGCA GGGCAGGGTG
  GAGAGGCAGG AGAACAAGGG CCCAGTGTGT ACCTGGCTCG CTCAGAGACT TGAATACAAG
  AGTGCCATGC TCCACAGCCT CCAGCCGGGC TCCCGGGGTG ATCAGAAAGC CACTAAGTGG
  M
  CAGAGGCTGA AGCCTGACAG CCACGACGCT GCAGAGTGAC CCGGGGTGGA CCGTGTGCAG
  AACGGGCCAA GGAGTAAGAA GGATGTGCCC TGTGGCTGAT GGAATTGGCC TCAGGGCAAA
  GAGGACACCC AAGACTTATC CAGGTATCCA TGGAAACCCA AAGGTGGAGA CTTGAGCTTC
  CTTTCCCTGG CTGTGACTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321649794	CHEV_5_113939959	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243749299					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:113658805 () rs orientation: forward

Symbol	Name	Function Class
Tssr48022	transcription start site region 48022	94 bp downstream
Tssr48023	transcription start site region 48023	34 bp downstream
Wscd2	WSC domain containing 2	within coordinates