rs243752767 SNP Detail

Summary

• ID
  rs243752767
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85266495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCGAAAAT TTCGGGTGTC
  GTGCTTAACA ATGGGCTTCT TAAATGAAAT TACTATGAAC TCCATCTCAA GTTTACATGA
  ATTCCATTAA GAATAGACTG GACAGTATTA TGTGATCGGT CATTACTTTT TATCTTTAAA
  AGCCTTTAAG GAAAGAAAGT ATCATTAAGC ATAGCTGAAA AGAACCCTGA AATAAACTTA
  W
  ATAAATGAAG GGCTTGGTGA ATGTTAGAGC CATTTCTTCA TTTTTTAAAA AAGTTGCATG
  ACCTCTAATA CCAGTTTTAG CACCTCTAGG ACGTTTGCCC ATCTTATTTG GCAAAAAATT
  GCCTCTTAAG GATTTGATAG CTGCCCAAAT TCATCAGTAT TCAAGCGCTT CTAAAAACAA
  CTTGGAAACT TAAAAACAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325484633	CHEV_17_85358407	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243752767					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85266495 () rs orientation: forward

Symbol	Name	Function Class
1110020A21Rik	RIKEN cDNA 1110020A21 gene	1357 bp upstream
Cpgi9575	CpG island 9575	1730 bp distal
Cpgi9576	CpG island 9576	186 bp distal
Gm65249	predicted gene, 65249	895 bp downstream
Ppm1b	protein phosphatase 1B, magnesium dependent, beta isoform	within coordinates
Rr393051	regulatory region 393051	670 bp upstream
Rr405500	regulatory region 405500	1371 bp downstream
Tssr146070	transcription start site region 146070	1929 bp downstream
Tssr146071	transcription start site region 146071	1049 bp downstream
Tssr149699	transcription start site region 149699	569 bp upstream
Tssr149700	transcription start site region 149700	540 bp upstream
Tssr149701	transcription start site region 149701	514 bp upstream