rs243762953 SNP Detail

Summary

• ID
  rs243762953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:91261870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTACACCT GAAACCCTTC
  CAATGCCCTT CACTTTACTT TCTGAAGATG TCTGCTTGAA GTTAGACCTC TCTCAACAGA
  TACTTTCCAA GTAGGCTAAA GCACATCGGT CTACAATCTT CGTTCTCCCA CAGAACTGCA
  AACGGGTTAG CTCTATAAAA GGAATGCCCA AGCCCGTGGT TAAAAGATGG GGGGGGGGGG
  R
  CTTCAAGGGT CTGTTAAGAT AGGTTCATGG AATGGCAGAG ATAACTGGGG GAAACTGCTT
  TTTAATTAAA CTCTTAAATG ATGACTTTGA AACATTCAAC ATTTTTCTTT TTCACAGACT
  TGTTTGCTCA GTTTTGACAA ATCTCTCAGA TGTCCCATTT AAGAAGCCAT TTTACGAGGA
  TTATCAAACA TCCCTGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362388962	MGP_WTSI_4_91040324	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243762953					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362388962	MGP_WTSI_4_91040324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:91261870 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14444	CpG island 14444			1027 bp distal
Cpgi14445	CpG island 14445			552 bp distal
Cpgi14446	CpG island 14446			717 bp proximal
Elavl2	ELAV like RNA binding protein 1			Intron
				mRNA-UTR
Mir6402	microRNA 6402			270 bp upstream
Rr595258	regulatory region 595258			1610 bp distal
Rr595259	regulatory region 595259			1967 bp distal
Rr595260	regulatory region 595260			1074 bp distal
Rr595261	regulatory region 595261			264 bp distal
Rr595262	regulatory region 595262			330 bp proximal
Tssr42416	transcription start site region 42416			1661 bp upstream
Tssr42417	transcription start site region 42417			1633 bp upstream
Tssr42418	transcription start site region 42418			1586 bp upstream