rs243763835 SNP Detail

Summary

• ID
  rs243763835
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38222685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATGGGCAC ATCATCTCAG AGAAATCCTT
  ACGGAAGCGT TTAAGTGGGA AGAAGGGACA AGCTTACTTT GCCCACAGGC CCCATACACG
  CAGGATATTG TGAGACTGCA CCCATGGTCC TCTGCTGGAT CTGATTTTGC CATTGCACCA
  W
  tccagagaca tttttatatg tcacacctgg gctgagacac tagtggtatc tggtaggtag
  TTCCGCATAA GACAACCTCA CAGCAGAGGA TTGACTAGTT GAGAGCATTC ACATAGTTGT
  GCCTTTAACA TACCTGTCTA GATTATTAGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324319572	CHEV_13_38130578	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243763835					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38222685 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	1640 bp upstream
Cpgi5461	CpG island 5461	1079 bp distal
Riok1	RIO kinase 1	within coordinates
Rr281252	regulatory region 281252	284 bp distal
Rr369679	regulatory region 369679	1254 bp downstream
Tssr119342	transcription start site region 119342	1399 bp downstream
Tssr122123	transcription start site region 122123	1796 bp upstream
Tssr122124	transcription start site region 122124	1762 bp upstream
Tssr122125	transcription start site region 122125	1551 bp upstream
Tssr122126	transcription start site region 122126	1525 bp upstream
Tssr122127	transcription start site region 122127	777 bp upstream
Tssr122128	transcription start site region 122128	757 bp upstream
Tssr122129	transcription start site region 122129	725 bp upstream