GAAGAAATGG GACTTAGAAC CTCTCTAATG GGCCTTGGTA AGGGACTTGG GGAGGGGGAG CTTTGAAGGA ATCGCTTAAG GGATTCGGGG TAAAGGGTTG CCTCGGGAGG AACAGACGAC GAAGCCATCT GCCGCTGGGG CATGGCTTCT GGGAGAAGAG CGAAGGACAG ACGTATCTTG GCTTAAGCAG ATTGATTATA Y GCTCTATCGC CAAAGTATTT GCCTGGCCCA ATGGAACTGG CAGAATGTTT TAGGTAAGGT TACTTAAAGG GTTTTTTAAA TAGCCCTATA ACGGTCCCTG GAGGAGAGAG GTCTGGTTAC GTACTGGTAG GTTGAAATGT TGGAAGAGAT GGAGATGGAT TACTTGGCAA CAACTGAAAA CGCAGACATG AGCCTTTGGG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss353155412 | MGP_WTSI_2_13996338 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
||||
rs243768988 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss353155412 | MGP_WTSI_2_13996338 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr2:14079522 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11218 | CpG island 11218 | 10 bp distal | ||||||
Gm57420 | predicted gene, 57420 | 658 bp downstream | ||||||
Rr55715 | regulatory region 55715 | within coordinates | ||||||
Stam | signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 | within coordinates | ||||||
Stamos | signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand | 777 bp upstream | ||||||
Tssr16223 | transcription start site region 16223 | 1086 bp downstream | ||||||
Tssr16224 | transcription start site region 16224 | 1039 bp downstream | ||||||
Tssr16225 | transcription start site region 16225 | 565 bp downstream | ||||||
Tssr16226 | transcription start site region 16226 | 520 bp downstream | ||||||
Tssr16227 | transcription start site region 16227 | 476 bp downstream | ||||||
Tssr22732 | transcription start site region 22732 | 844 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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