rs243776348 SNP Detail

Summary

• ID
  rs243776348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:3280828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTGCTG CTAAGCAAAA
  CCTCTCTGCC ACTCTCGGCT TGGCTGAGTT CCTCTCTTGG CTCAGGGTTA GTGATCTGGT
  AAGGTCTAGG AGGCTTAGGA CCCAGGGGGC GCCTTTCAGC TGAAAAACAC CTCGGCTGCA
  GCAAGCTAGC TGGGAAGCTC CCAGTTCTAA AGAGAGGCTG TTTACCAGAA GAGCATAACA
  R
  GGGCCGGCCA GTCTGACTGC AAGGAGACAA AACTGCTGCC AAGGAGGACC CCCCCCCCCC
  ATTTGGACAC TGGCTGTTGA GTCACCTGCG AGCCGAAGAG ACGAGGATGC TGTTGGCTTG
  GGTACACACA TTTCTTCTCA GCAACATGCT TCTGGCAGAA GCCTATGGAT CTGGAGGTGA
  GATTACGTTT TCTCCCCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382239533	MGP_WTSI_11_3230831	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243776348					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382239533	MGP_WTSI_11_3230831	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3280828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	944 bp proximal
Gm12592	predicted gene 12592	within coordinates
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	mRNA-UTR
Rr402383	regulatory region 402383	780 bp upstream
Rr402384	regulatory region 402384	1427 bp upstream
Rr441527	regulatory region 441527	10 bp distal
Rr441528	regulatory region 441528	340 bp proximal
Rr441529	regulatory region 441529	991 bp proximal
Tssr3405	transcription start site region 3405	69 bp downstream
Tssr3406	transcription start site region 3406	1657 bp upstream
Tssr100039	transcription start site region 100039	287 bp downstream
Tssr100040	transcription start site region 100040	134 bp downstream
Tssr100041	transcription start site region 100041	79 bp downstream
Tssr100042	transcription start site region 100042	48 bp downstream
Tssr100043	transcription start site region 100043	16 bp downstream
Tssr100044	transcription start site region 100044	within coordinates
Tssr100045	transcription start site region 100045	4 bp upstream
Tssr100046	transcription start site region 100046	51 bp upstream
Tssr100047	transcription start site region 100047	88 bp upstream
Tssr100048	transcription start site region 100048	118 bp upstream
Tssr100049	transcription start site region 100049	1598 bp upstream
Tssr100050	transcription start site region 100050	1633 bp upstream
Tssr100051	transcription start site region 100051	1666 bp upstream
Tssr106459	transcription start site region 106459	352 bp downstream
Tssr106460	transcription start site region 106460	1425 bp downstream
Tssr106461	transcription start site region 106461	1449 bp downstream