rs243785672 SNP Detail

Summary

• ID
  rs243785672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13250672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACCCACC TGGGCACCCG
  AGCTCGCGCC GCCTGCGCGC GCTCTGCGGG ATCCATGCGG AGAAGGGCCA GGGACCGCGG
  GACTCACAAC CTCTGCAGCC CCGAGCGCTG GACCCCGGTG CGCCGCTGGC CCCGGGGCGC
  GCGAGTGCTT CCGGCGGGGG CGTGGCCGAG ACGGGGGCGG GGTGGGGACG AGGGGCGGAG
  Y
  CAGTGGGGGC GGGGCGGGGT AGAGTGGACG GAGCGGGGCT GGGGTGGGGG CGGTGTCGGA
  GATGGGAGCG CCTAGGGACC CGAACCGAGT GCACCTGCTG CAGCCTGGCA CTAGGGATTT
  GAAAATCCAT GGAGATGGAA ACCTATGCCG AGGTTAGAAG ACCTGGATCC ACTTTGCAGG
  ATTTTAAATA TCCTTCAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss373740652	MGP_WTSI_8_13200672	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs243785672					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373740652	MGP_WTSI_8_13200672	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13250672 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810030D12Rik	RIKEN cDNA 2810030D12 gene			110 bp upstream
Cpgi20110	CpG island 20110			within coordinates
Gm56825	predicted gene, 56825			within coordinates
Grtp1	GH regulated TBC protein 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr659872	regulatory region 659872			1104 bp distal
Rr659873	regulatory region 659873			within coordinates
Rr659874	regulatory region 659874			293 bp proximal
Rr659875	regulatory region 659875			812 bp proximal
Rr659876	regulatory region 659876			1200 bp proximal
Rr659877	regulatory region 659877			1551 bp proximal
Tssr76386	transcription start site region 76386			104 bp upstream
Tssr76387	transcription start site region 76387			274 bp upstream
Tssr80428	transcription start site region 80428			36 bp upstream
Tssr80429	transcription start site region 80429			741 bp downstream