rs243785928 SNP Detail

Summary

• ID
  rs243785928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:103978631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAGGTGTT GTCACCGCAT CTAAAGCTGT
  TACTGCAGAA TGGGTGGACG ATATGTTTCC TGTGTCACAC TCAGGAATCA CACGCTGGCT
  ATTAACAGCG CAGTGCACAA GAAAAACTTG CACAGAATTC ACAAATCTAG TATGAATATT
  R
  TAATGACTTT CCATGTTTTT ATTACTGTTT TTTGTTTTGT TATTTGTTAT TTTTTTAGCT
  CCTCTATCTT GAGTTGACTA TTTTTATCTC TCAAAGAACT CAGATCTTAC AGAATCAATC
  AGGAAAACAG AATTTCAAAA CAGTACAGGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323163290	CHEV_9_104003762	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243785928					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103978631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acad11	acyl-Coenzyme A dehydrogenase family, member 11			Intron
				Noncoding-Transcript-Variant
Ackr4	atypical chemokine receptor 4			Intron
				Noncoding-Transcript-Variant
Gm47000	predicted gene, 47000			within coordinates
Rr686043	regulatory region 686043			823 bp proximal
Rr686044	regulatory region 686044			1376 bp proximal
Rr686045	regulatory region 686045			1577 bp proximal
Tssr2998	transcription start site region 2998			1146 bp downstream
Tssr91231	transcription start site region 91231			884 bp downstream
Tssr91232	transcription start site region 91232			910 bp downstream
Tssr91233	transcription start site region 91233			996 bp downstream
Tssr91234	transcription start site region 91234			1118 bp downstream
Tssr91235	transcription start site region 91235			1569 bp downstream